photomicAI

Time- and cost-efficient analysis of plankton in microscopy images

We are a spin-off project at Fraunhofer IGD and developing an AI-based software that you can use to analyze your microscopy images for the assesment of aquatic ecosystems.

Microscopy image of plankton with detection results

Features

Automated analysis of plankton

Discover how our powerful AI models can be used to analyze and measure plankton in microscopy images in a fraction of the time.

Classification

Description

Automated taxonomic identification of phytoplankton and zooplankton species in single images.

Benefits

Enables the automated analysis of images generated by in-situ microscopes. Can be used to count the number of plankton individuals of different species in a sample.

Detection

Description

Detection and taxonomic identification of phytoplankton and zooplankton in complex microscopy images with a variety of plankton species and individuals.

Benefits

Enables the automated analysis of microscopy images taken with standard laboratory microscopes. Can be used for counting and rough measurement of plankton individuals of different species in a sample.

Segmentation

Description

Segmentation and taxonomic identification of phytoplankton in complex microscopy images with a variety of plankton species and individuals.

Benefits

Enables the automated counting and pixel-accurate determination of geometric properties, including the biovolume of phytoplankton individuals of different species in a sample. Suitable for use with standard laboratory microscopes for the assessment of the status of water bodies according to the European Water Framework Directive (WFD).

Workflow

How you can analyse a water sample in just a few minutes.

Step 1: Upload images

Upload your microscope images in our web-based analysis software. No specialized hardware or any software installation is required.

Step 2: Select AI model

Select one of our powerful AI models suitable for your use case and start the automated image analysis.

Step 3: Verify results

View and verify the visualized model results.

Step 4: Download results

Download model results and calculated statistics.

Microscopy image with segmentation results

Team

We combine artificial intelligence and microbiology

Our mission is to enable a time- and cost-efficient analysis of microscopy images of plankton for the assessment of aquatic ecosystems.

Photo of team member Dennis

Dennis Sidin

Project lead and AI researcher

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Photo of team member Erik

Erik Zschaubitz

Microbiologist

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Photo of team member Tom

Tom Ahlgrimm

AI researcher

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Reach out to us

You have questions, an exciting research topic or are interested in a demonstration of our software? Feel free to contact us.

  • Email us

    photomicai@igd-r.fraunhofer.de

  • Follow us

    https://www.linkedin.com/in/dennis-sidin